7. Appendix: Acronyms¶
- CI
- continuous integration
- CPU
- central processing unit
- DES
- discrete event simulation
- FBA
- flux balance analysis
- GPU
- graphical processing unit
- hESC
- human embryonic stem cell
- InChI
- IUPAC International Chemical Identifier
- MIASE
- Minimum Information About a Simulation Experiment
- ODE
- ordinary differential equations
- PDE
- partial differential equations
- PDES
- parallel discrete event simulation
- PGDB
- pathway genome database
- ROSS
- Rensselaer’s Optimistic Simulation System
- SBML
- Systems Biology Markup Language
- SED-ML
- Simulation Experiment Description Markup Language
- SESSL
- Simulation Experiment Specification via a Scala Layer
- SI
- International System of Units
- SMILES
- simplified molecular-input line-entry system
- SSA
- Stochastic Simulation Algorithm
- SVG
- Scalable Vector Graphics
- VCS
- version control system
- WC
- whole-cell